I want to run Tuxedo2 workflow associating cufflinks with a gtf annotation file. TopHat seems to be OK but after I get this error with cufflinks:
Fatal error: Matched on ERROR ERROR:galaxy.datatypes.registry:Error calling method ICM from class Traceback (most recent call last): File "/cvmfs/main.galaxyproject.org/galaxy/lib/galaxy/datatypes/registry.py", line 425, in load_datatype_sniffers aclass = getattr(module, datatype_class_name)() AttributeError: 'module' object has no attribute 'ICM'
Does anybody can help me with this error?
Thanks for your answer Jennifer. I am waiting for your feedback.
This error appears and I can read there is an error with this data. I can open the datafile and is my GTF. Do you think my GTF is wrong? In my GTF the chromosomes loci are annoted as 1:3905738-3986215 for example and not chrs1:3905738-398621. Do you think is a problem for cufflinks?
Hello, We saw a few jobs end with the error yesterday and are following up. More feedback soon. Jen, Galaxy team