Question: Cleanup Script Error - Guess_Dialect_For_Url
gravatar for rocco.piazza
6.7 years ago by
rocco.piazza10 wrote:
Hello, I'm working on a local instance of Galaxy-dist and I just updated it. Right after the update I tried to run the cleanup scripts. Unfortunately what I'm getting is the following error: # sh -d 0 -r Traceback (most recent call last):   File "./scripts/cleanup_datasets/", line 524, in <module>     if __name__ == "__main__": main()   File "./scripts/cleanup_datasets/", line 101, in main     app = CleanupDatasetsApplication( config )   File "./scripts/cleanup_datasets/", line 512, in __init__     self.model = galaxy.model.mapping.init( config.file_path, config.database_connection, engine_options={}, create_tables=False, object_store=self.object_store )   File "/illumina/Galaxy/galaxy-dist/lib/galaxy/model/", line 1818, in init     load_egg_for_url( url )   File "/illumina/Galaxy/galaxy-dist/lib/galaxy/model/", line 1798, in load_egg_for_url     dialect = guess_dialect_for_url( url )   File "/illumina/Galaxy/galaxy-dist/lib/galaxy/model/", line 1794, in guess_dialect_for_url     return (url.split(':', 1))[0] AttributeError: 'bool' object has no attribute 'split' The same error occurs if I try to run other cleanup scripts, such as the delete_datasets or purge_datasets. Any idea to solve this issue? Best regards, Rocco
galaxy • 906 views
ADD COMMENTlink modified 6.7 years ago by Jennifer Hillman Jackson25k • written 6.7 years ago by rocco.piazza10
gravatar for Jennifer Hillman Jackson
6.7 years ago by
United States
Jennifer Hillman Jackson25k wrote:
Hi Rocco, To help us get oriented, which galaxy-dist pull did you start from and which did you update to? If you have the release date/hg pull numbers, that would be great. If you need to reference, these are the prior distributions: Ideally, you would be current through the March 12, 2012 distribution, which included some bugs fixes for python 2.5 support. Support for python 2.4 ended with the Nov 18, 2011 distribution. If there is anything else customized about your system that you feel would be relevant (other odd behavior?), that would be good to send back. For example, can you delete and purge datasets through the UI? Histories? I am going to move your question over the mailing list, which is the best place to reach the development community. The galaxy-user list is intended for data/tool usage questions, with a focus on Galaxy main. Please leave the galaxy-dev list in the "cc" for your return email, Thanks! Jen Galaxy team
ADD COMMENTlink written 6.7 years ago by Jennifer Hillman Jackson25k
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