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  Hi, I want to run Tuxedo2 workflow associating cufflinks with a gtf annotation file. TopHat se...
• Bioblend Folders Documentation Wrong? Please Help
  Hi while using the bioblend.galaxy.folders.FoldersClient there are the errors of AttributeError w...
• Internal Server Error for workflow
  Hello I am getting following error when I try to run the workflow from my admin account. my lin...
• Fatal error in StringTie
  Dear all I was running StringTie and I got this error message. Fatal error: Exit code ...
• Error when using HTseq-count
  Hello,  I am a newbie using a Galaxy Instance in the Amazon cloud and when I run HSseq-count I ge...
• Can Remote_User Be Changed To Another Header Variable?
  Hi, We have a SSO environment provided by Oracle Fusion products and for some reason, they don't...
• Bug: Using The Python Builtin "Id" As Parameter Or Variable Name
  Hi, we encountered this problem when trying to clone a shared workflow: ... File '/data/bioinfor...
• Workflow sharing menu not working
  Hello, I have serious problems to download, view or export workflows of my local 16.04 instanc...
• Condor And Galaxy
  Hello , I get an error in job_conf.xml. İ use galaxy jobs with htcondor and edit job_conf.xml fil...
• Cannot login or create history - 'AttributeError: 'NoneType' object has no attribute 'current_history''
  There is an installation of Galaxy on a server cluster instance. I am unable to login or create a...
• Error In Mapping With Bowtie
  Hi Experts! I uploaded my data (two pair-end fasq files from illumina), processed with fasq groo...
• merge collections into single list of dataset tool
  I am getting the following error Error executing tool: 'HistoryDatasetAssociation' object has n...
• Gff Parsing With Biopython
  Hi, I have the following GFF file from a SNAP X1 SNAP Einit 2579 2712 -3.221 +...
• 'WSGIThreadPoolServer' object has no attribute 'thread_pool'
  Hi guys, I am trying to install a new local instance of galaxy, on a newly installed server DELL...
• Exception When Using Remote_User.
  Hi, The following error will occur under certain condition when using remote_user. AttributeE...
• Tool Without Input Parameters
  Hi, Is there a way to provide a tool through galaxy that doesn't need any input parameters? If I...
• Workflow input dataset
  There is an error in the galaxy input datasets in the workflow. First I thought it was me but now...
• Visualize gff3 file
  Hi All I am a new user of Galaxy. So please bear with me, if I am asking very obvious question. ...
• Problems after upgrading Galaxy to 18.09
  Hello I just tried to upgrade my Galaxy instance from 18.05 to 18.09 but I am unable to restart ...
• Adding new DataProvider for JSON
  My goal is to read a JSON file from History into a JS script (for visualization puposes). The mak...
• Conflict There was a conflict when trying to complete your request. Error generating display_link: type object 'Bam' has no attribute 'name'
  Good afternoon, I keep getting the following error when trying to visualise data using galaxy ma...
• migrating datasets to other path
  Hi, I have a running galaxy instance with 500GB+ datasets. Since the database folder is becoming...
• Installation TTW throws python error, remains in "cloning" stage
  Galaxy 18.05 on CentOS 7.5 Some tools, when I try to install them through the web, will get stuc...
• Error uploading Galaxy file via HTTP
  Hi, In our facility we have a web server that uploads files to Galaxy libraries via HTTP request...