Question: Galaxy With Python2.6
gravatar for Rochak Neupane
9.6 years ago by
Rochak Neupane60 wrote:
Will galaxy source be updated to be compatible with python 2.6? The README.txt file stats that it requires python 2.4 or 2.5, but I used script to build the required eggs for 2.6. Trying to run galaxy, I get a few warnings about deprecated modules: sets, sha. lib/galaxy/util/ DeprecationWarning: the sets module is deprecated lib/galaxy/model/ DeprecationWarning: the sha module is deprecated; use the hashlib module instead Once I fix that, Galaxy starts up, but I get the following error when I try to go to it from a browser. File 'build/bdist.linux- x86_64/egg/weberror/evalexception/', line 364 in respond File 'build/bdist.linux-x86_64/egg/paste/debug/', line 98 in __call__ File 'build/bdist.linux-x86_64/egg/paste/', line 539 in intercept_output File 'build/bdist.linux-x86_64/egg/beaker/', line 103 in __call__ File 'build/bdist.linux-x86_64/egg/paste/', line 80 in __call__ File 'build/bdist.linux-x86_64/egg/paste/', line 632 in __call__ File '/home/rochak/galaxy_python26/lib/galaxy/web/framework/', line 124 in __call__ body = method( trans, **kwargs ) File '/home/rochak/galaxy_python26/lib/galaxy/web/controllers/', line 23 in index m_c=m_c, m_a=m_a ) File '/home/rochak/galaxy_python26/lib/galaxy/web/framework/', line 513 in fill_template return self.fill_template_mako( filename, **kwargs ) File '/home/rochak/galaxy_python26/lib/galaxy/web/framework/', line 523 in fill_template_mako return template.render( **data ) File 'build/bdist.linux-x86_64/egg/mako/', line 114 in render File 'build/bdist.linux-x86_64/egg/mako/', line 287 in _render File 'build/bdist.linux-x86_64/egg/mako/', line 304 in _render_context File 'build/bdist.linux-x86_64/egg/mako/', line 337 in _exec_template File '/home/rochak/galaxy_python26/database/compiled_templates/', line 97 in render_body context.write(unicode(next.body())) AttributeError: 'builtin_function_or_method' object has no attribute 'body' Thoughts? Thanks, Rochak
galaxy • 1.0k views
ADD COMMENTlink written 9.6 years ago by Rochak Neupane60
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