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• Problem with cloudmap workflow
  Hi I am using cloudmap workflow on Galaxy main sever to identify the mutation of mutant C. elega...
• regarding to mapping and ontology
  Hello, I am done with BLASTX against NR and Swiss-Prot database with my non-model plan...
• Removing sequence duplicates
  I have used top hat in galaxy to map my files. After mapping i am interested in removing sequence...
• Tophat and Cufflinks are not preocessing
  Hi, I started a process yesterday (24 hours ago) to map 6 files on Tophat, only two processed and...
• How to add a single dataset into an existing dataset list in Galaxy
  Hi, I am a new beginnner doing ChIP-seq analysis using Galaxy. For the analysis, I am following ...
• Mapping Mirna Data
  Dear All I am interested in using Galaxy to compare miRNA sequencing data. I have previously gr...
• Adding Custom Genome Builds To A Galaxy Instance
  Hi Galaxy Users, I am trying to understand the process of adding new entries to the genome builds...
• Fatal Errors occurring with htseq analysis
  Hi, I am in the process of analyzing some RNAseq data. I uploaded the data and successfully mapp...
• How To Process Paired Reads In Galaxy
  Hi Users How do I process paired reads from an Ilumina Miseq platform? If I first use "Groomer" ...
• Need help with "Map with BWA for Illumina" tool
  Thanks a lot for your answer. I  used FASTQ groomer to convert fastq format to fastqsanger. I sta...
• running of Unified Genotyper encounters error
  Hi, I am doing mapping using galaxy. Just now the process of Unified Genotyper  encounters error...
• Cuffdiff Errors: "Loading reference annotation" and "Inspecting maps and determining fragment length distributions". whats that mean?
  Hello everybody, I'm very new in RNA seq analysis I have run cuffdiff on 3 condition dataset coll...
• Error with cuffdiff
  Hi, I'm new to Galaxy and the tuxedo pipeline but have managed to get my data to the point where...
• GEO SRA fastq-dump with very low mapping rate (Galaxy)
  Dear Biostars, I am a quite unexperienced biologist doing a metaanalysis of RNA-seq/microarray e...
• add custom tools to local galaxy
  hi, I'm installing tools to galaxy, but some tools are not existed in tool shed, such as fqt...
• Galaxy not producing resluts
  Hello, I've been trying to map reads using the BWA-MEM tool for the last two days, and Galaxy co...
• How to check unaligned reads?
  I have a pair end SRA files for which I have done FASTQc. The SRA files are then mapped against ...
• ChIP-seq analysis on small genome
  Hello, I am using Galaxy to analyze ChIP-seq data of a mammalian cell line containing virus episo...
• ChIP seq : How to map sequencing data that one base is not called?
  I did ChIP-sequencing. During sequencing process, one base was not called due to a problem at the...
• Galaxy Main - Files Not Found, Server Error
  Hello, I am getting a resource not found error when I try to view data on the Galaxy Main Server...
• SAM-to-BAM; an error occurred setting the metadata for this dataset.
  Hi. I am very new to Galaxy and am following a simple workflow for processing FASTQ files: Step ...
• Error message: This job was terminated because it used more memory than it was allocated
  Hi,  I'm processing exome data (enriched with Nextera kit) in Galaxy. After mapping the reads us...