Question: Mapping Mirna Data
gravatar for Mark Lindsay
5.8 years ago by
Mark Lindsay70
United Kingdom
Mark Lindsay70 wrote:
Dear All I am interested in using Galaxy to compare miRNA sequencing data. I have previously groomed, clipped and then mapped miRNA data onto hg19 using bowtie. I have then identified differentially expressed miRNAs using cuffdiff and the UCSC downloaded miRNA/snoRNA database. However, I have recently tried to repeat this process but find the cuffdiff is unable to run. I just wondered why cuffdiff is no longer working or if there is alternative approach to comparing miRNA expression? Best wishes Mark
alignment bowtie • 929 views
ADD COMMENTlink modified 5.8 years ago by Jennifer Hillman Jackson25k • written 5.8 years ago by Mark Lindsay70
gravatar for Jennifer Hillman Jackson
5.8 years ago by
United States
Jennifer Hillman Jackson25k wrote:
Hello Mark, The public Main Galaxy instance has been very busy for the last week or so. The best strategy is to start the jobs that are the most important first, to leave these queued, and to not stop/restart jobs. These will eventually run in the order they were submitted with respect to other users also utilizing the public resource. If I have misunderstood your comments, please send more details. Best, Jen Galaxy team -- Jennifer Hillman-Jackson Galaxy Support and Training
ADD COMMENTlink written 5.8 years ago by Jennifer Hillman Jackson25k
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 165 users visited in the last hour