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Question: Mycoplasma Pneumoniae M129 And Fh Reference Genome
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gravatar for David K Crossman
7.5 years ago by
David K Crossman • 130
United States
David K Crossman • 130 wrote:
Hello! I noticed that Mycoplasma pneumonia M129 and FH are not found in the reference genome in Galaxy. Would it be possible to have both of those in there? Thanks, David
galaxy • 879 views
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modified 7.5 years ago by Jennifer Hillman Jackson ♦ 25k • written 7.5 years ago by David K Crossman • 130
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gravatar for Jennifer Hillman Jackson
7.5 years ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:
Hello David, The genome for Mycoplasma pneumonia M129 is available as a reference genome (see "attributes" assignment too via the pencil icon), however it is not yet available in all NGS tools. We add both M129 and Mycoplasma pneumonia FH to our list of new genomes to process through all tool. To confirm, this would be the correct source for the FH strain? http://www.ncbi.nlm.nih.gov/bioproject/46155 Meanwhile, if you would like to work with the genomes immediately, they can be loaded into your history (use FTP) and used as a reference genome from that source with most tools. Hopefully this is helpful! Best, Jen Galaxy team -- Jennifer Jackson http://usegalaxy.org http://galaxyproject.org
ADD COMMENT • link written 7.5 years ago by Jennifer Hillman Jackson ♦ 25k
Jen, Thanks for the useful tips! Yes, the NCBI bioproject link is the correct source for the FH strain. Thanks, David To: David K Crossman Cc: galaxy-user@lists.bx.psu.edu Subject: Re: [galaxy-user] Mycoplasma pneumoniae M129 and FH reference genome Hello David, The genome for Mycoplasma pneumonia M129 is available as a reference genome (see "attributes" assignment too via the pencil icon), however it is not yet available in all NGS tools. We add both M129 and Mycoplasma pneumonia FH to our list of new genomes to process through all tool. To confirm, this would be the correct source for the FH strain? http://www.ncbi.nlm.nih.gov/bioproject/46155 Meanwhile, if you would like to work with the genomes immediately, they can be loaded into your history (use FTP) and used as a reference genome from that source with most tools. Hopefully this is helpful! Best, Jen Galaxy team -- Jennifer Jackson http://usegalaxy.org http://galaxyproject.org
ADD REPLY • link written 7.5 years ago by David K Crossman • 130
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