Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Forum
Planet
All »
Home
Log In
Question: Can not run sh run.sh in terminal "directory doesn't exist"
0
gravatar for anceamia
12 months ago by
anceamia • 0
anceamia • 0 wrote:

Hi,

I have successfully installed the Galaxy on my MAC and was able to run sh run.sh to open Galaxy in the web interface, but my terminal crashed and when I went back and wanted to open Galaxy again it tells me that sh run.sh command not in the directory. The $ git clone -b release_17.09 https://github.com/galaxyproject/galaxy.git has installed. Is there a way to uninstall and try to install again?

Please help.

Thanks.

software error galaxy • 425 views
ADD COMMENT • link •
modified 12 months ago by Jennifer Hillman Jackson ♦ 25k • written 12 months ago by anceamia • 0
0
gravatar for Jennifer Hillman Jackson
12 months ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

Are you running the command inside the galaxy directory installed by git? If not, try that first.

If the command then gives a new error, and it might if the prior process running did not entirely shut down, you should kill the process completely, then start up Galaxy again. This is how: https://galaxyproject.org/admin/get-galaxy/#shutting-down-galaxy

It is always possible to delete the existing galaxy directory and reinstall, but that shouldn't be necessary unless somehow the installation itself became corrupted during the crash.

Give these options a try and please let us know if you need more help.

Thanks, Jen, Galaxy team
ADD COMMENT • link written 12 months ago by Jennifer Hillman Jackson ♦ 25k
Please log in to add an answer.

Similar posts • Search »

Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 171 users visited in the last hour