Question: Galaxy Start it up error: .venv/bin/activate: No such file or directory
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s4251484 • 0 wrote:
Hi, i'm a galaxy beginner
Got this error while running the start up command:
$ sh run.sh
Creating Python virtual environment for Galaxy: .venv
To avoid this, use the --no-create-venv flag or set $GALAXY_VIRTUAL_ENV to an
existing environment before starting Galaxy.
New python executable in C:\Users\uqcong7\AppData\Local\Programs\Git\galaxy\.venv\Scripts\python.exe
Installing setuptools, pip, wheel...done.
Running virtualenv with interpreter C:/Python27/python.exe
Activating virtualenv at .venv
./scripts/common_startup_functions.sh: line 100: .venv/bin/activate: No such file or directory
I then clicked into the .venv folder and found the folder containing "activate" is Scripts instead of bin
Hence i went to edit ./scripts/common_startup_functions.sh: line 100: .venv/Scripts/activate
run sh again
then got this error
$ sh run.sh
Creating Python virtual environment for Galaxy: .venv
To avoid this, use the --no-create-venv flag or set $GALAXY_VIRTUAL_ENV to an
existing environment before starting Galaxy.
New python executable in C:\Users\uqcong7\AppData\Local\Programs\Git\galaxy\.venv\Scripts\python.exe
Installing setuptools, pip, wheel...done.
Running virtualenv with interpreter C:/Python27/python.exe
Activating virtualenv at .venv
Requirement already satisfied: pip>=8.1 in c:\users\uqcong7\appdata\local\programs\git\galaxy\.venv\lib\site-packages (18.0)
Invalid requirement: 'lib/galaxy/dependencies/pinned-requirements.txt'
Traceback (most recent call last):
File "c:\users\uqcong7\appdata\local\programs\git\galaxy\.venv\lib\site-packages\pip\_internal\req\req_install.py", line 253, in from_line
req = Requirement(req)
File "c:\users\uqcong7\appdata\local\programs\git\galaxy\.venv\lib\site-packages\pip\_vendor\packaging\requirements.py", line 97, in __init__
requirement_string[e.loc:e.loc + 8]))
InvalidRequirement: Invalid requirement, parse error at "u'/galaxy/'"
PLEASE HELP >.<
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modified 3 months ago
by
Jennifer Hillman Jackson ♦ 25k
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written
4 months ago by
s4251484 • 0
