Question: trimgalore on interleaved paired-end fastq files
13 months ago by
DiegoVeliz • 0
DiegoVeliz • 0 wrote:
I'm analyzing interleaved paired-end fastq files downloaded via fastq-dump. I am trying to remove adapter sequences using Trim Galore, but I am not sure whether Trim Galore is correctly detecting that the data is interleaved, because it asks for 2 fastq files.
So my question is: Can Trim Galore process interleaved paired-end fastq files? If so, how can it be accomplished?
Thanks in advance
ADD COMMENT • link •modified 13 months ago by Jennifer Hillman Jackson ♦ 25k • written 13 months ago by DiegoVeliz • 0