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• Trim Galore Galaxy Integration
  Hello. I would like to integrate this great tool "Trim Galore" in the local Galaxy. Has anyone di...
• Adapter and quality trimming using Trim Galore integrated Galaxy
  Hello. I need to make adapter trimming and quality trimming for my FASTQ paired files. I work in ...
• Removing 5' Adapters from Reads
  Is there a way to remove 5' adapters using Trim Galore? I know that cutadapt has this capability,...
• Question: Trim Galore in Galaxy cannot work
  Hi, everyone, I have a problem about Galaxy trim galore tools. When I download data from SRA, Ga...
• Trouble with FASTQ joiner
  Hi Biostars community, I attempting to run some initial QC and manipulation tools on some rnaseq ...
• Trimmomatic and Trim Galore are not working.
  I am performing an RNA-seq and am trying to trim adapter sequences with Trim Galore. When I made ...
• unable to run tophat on trim galore processed reads
  dear sir i have run tophat on reads trimmed by trim galore with reference to hg19. i am getting r...
• Trim Galore version - Adapter sequence
  Hello, I have been using Galaxy's Trim galore for clipping adapters from Illumina small RNA sequ...
• Upload Fast Q file into Trim galore
  Hi, Hope you can help: I don't seem to be able pull-up my fastQ file in Trim galore..as I'd Like...
• trimming my illumina sequences
  Good morning, I am new in use of galaxy and I need help. I tried to trim my raw data from MiSeq u...
• trimgalore on interleaved paired-end fastq files
  Hi, I'm analyzing interleaved paired-end fastq files downloaded via fastq-dump. I am trying to r...
• Job failures at http://usegalaxy.org 2016-12-12
  dear galaxy team i am working on human single end illumina data i want to imprve the mapping alig...
• No fastqsanger dataset available
  I uploaded (get date) two fastq paired files, but none are available for Trim and other applicati...
• How do i remove multiple adapter sequences from my RNAseq reads?
  Hi there, I want to remove the universal adapters as well as the index adapters in each data fil...
• Getting Figures from R with Galaxy DESEQ2 output?
  Hi, So this summer I ran a bioinformatics workflow on differential gene expression in three samp...
• Trim Galore run time issue
  Hello, I am following the tutorial for NGS Quolity Control. I reached the step where the Trim Gal...
• Workflow Failure Issue with .dat Compressed Files on a Local Galaxy Instance
  Greetings, We have developed a workflow using a local galaxy server instance including the follo...
• NGS: QC and manipulation
  Hello, I'm a beginner (my email zare@ibt.lt) of using Galaxy. I tried to use Trimmomatic or Trim ...
• Fastq format to final format
  Hi I used the galaxy to remove sequence debris and sequencing primers, as well as exclude small ...