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Question: Tuxedo2 workflow cannot run in Galaxy
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gravatar for imichalop
13 months ago by
imichalop • 0
Biomedical Research Foundation, Academy of Athens, Athens, Greece
imichalop • 0 wrote:

Dear Galaxy users,

I try to follow this RNA seq tutorial:

I was able to upload the GFF and FASTQ files and to import "DEG:Tuxedo2 - 2 Conditions 3 Replicates each" workflow. When I try to run Tuxedo2 though, I get this error message:

Uncaught exception in exposed API method:

Any idea what goes wrong?

Ioannis
rna-seq software error galaxy • 388 views
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modified 13 months ago • written 13 months ago by imichalop • 0
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gravatar for Jennifer Hillman Jackson
13 months ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

Whoever published this at youtube left some comments about the tutorial being problematic. Troubleshooting community tutorials can involve many factors that are beyond the scope of what we can help with here. I do see that you left them a comment, and they might be able to help you if you choose to stick with that tutorial version.

But as an alternative, we strongly suggest that you consider using the curated set of tutorials here: https://galaxyproject.org/learn/

Thanks, Jen, Galaxy team
ADD COMMENT • link written 13 months ago by Jennifer Hillman Jackson ♦ 25k
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gravatar for imichalop
13 months ago by
imichalop • 0
Biomedical Research Foundation, Academy of Athens, Athens, Greece
imichalop • 0 wrote:

Dear Jen,

Thank you for your help. I will use your tutorials, as you suggested.

Best,

Ioannis
ADD COMMENT • link modified 13 months ago • written 13 months ago by imichalop • 0
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