Question: Issues with extracting galaxy workflow?
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mshortr • 0 wrote:
Hi all,
Has anyone had issues with extracting Galaxy workflows from a history before? I will add more information later (a screenshot of the error I am getting) but for now, it looks like it may be timing out before it extracts the workflow. Keep in mind, I am running Galaxy on a VirtualMachine on my Windows PC so perhaps power might be a problem. Is it possible for a workflow to timeout? I tried it on a smaller subset of the history (about 1/4 to 1/2 of the full workflow) and it was successful at creating a workflow.
Any ideas?
Thanks,
Megan
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modified 3.2 years ago
by
Jennifer Hillman Jackson ♦ 25k
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written
3.2 years ago by
mshortr • 0
Here is the error message: I am completely stumped. Has anyone run into this before?
Error Traceback:
View as: Interactive | Text | XML (full)
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Exception: Failed to extract job.URL: http://127.0.0.1:8080/workflow/build_from_current_history
Module weberror.evalexception.middleware:364 in
view
respond>> app_iter = self.application(environ, detect_start_response)Module paste.recursive:84 in
view
__call__>> return self.application(environ, start_response)Module paste.httpexceptions:633 in
view
__call__>> return self.application(environ, start_response)Module galaxy.web.framework.base:133 in
view
__call__>> return self.handle_request( environ, start_response )Module galaxy.web.framework.base:191 in
view
handle_request>> body = method( trans, **kwargs )Module galaxy.webapps.galaxy.controllers.workflow:1021 in
view
build_from_current_history>> workflow_name=workflow_nameModule galaxy.workflow.extract:31 in
view
extract_workflow>> steps = extract_steps( trans, history=history, job_ids=job_ids, dataset_ids=dataset_ids, dataset_collection_ids=dataset_collection_ids )Module galaxy.workflow.extract:146 in
view
extract_steps>> raise Exception( "Failed to extract job." )Exception: Failed to extract job.