Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Forum
Planet
All »
Home
Log In
Question: problems running an extracted workflow
0
gravatar for lisa.schechter
2.9 years ago by
lisa.schechter • 0
lisa.schechter • 0 wrote:

I am having a problem running a workflow I constructed.  The workflow involves: 1) mapping DNA sequences to a reference genome (human hg19), 2) identifying variants using FreeBayes, and 3) annotating the locations of the polymorphisms using ANNOVAR.  The programs run fine in my history, but when I extract a workflow and then try to run the workflow, things get hung up on the ANNOVAR step.  An error message says "Required metadata values are missing". For some reason, the parameters from my history don't seem to transfer into the workflow.  Also, I cannot edit this step at all in the workflow editor.  How do I fix this?  

Thanks.
workflow software error • 790 views
ADD COMMENT • link •
written 2.9 years ago by lisa.schechter • 0
0
gravatar for Jennifer Hillman Jackson
2.9 years ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hi Lisa,

We would like to have a look at the history and workflow to investigate. Please generate a share link for both and email these to galaxy-bugs@lists.galaxyproject.org. Including a link to this post would be helpful. Please be certain that all datasets in the analysis path remain undeleted.

Thanks, Jen, Galaxy team
ADD COMMENT • link written 2.9 years ago by Jennifer Hillman Jackson ♦ 25k
Please log in to add an answer.

Similar posts • Search »

Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 175 users visited in the last hour