Question: Tuxedo2 workflow cannot run in Galaxy
0
gravatar for imichalop
12 weeks ago by
imichalop0
Biomedical Research Foundation, Academy of Athens, Athens, Greece
imichalop0 wrote:

Dear Galaxy users,

I try to follow this RNA seq tutorial:

I was able to upload the GFF and FASTQ files and to import "DEG:Tuxedo2 - 2 Conditions 3 Replicates each" workflow. When I try to run Tuxedo2 though, I get this error message:

Uncaught exception in exposed API method:

Any idea what goes wrong?

Ioannis

rna-seq software error galaxy • 129 views
ADD COMMENTlink modified 12 weeks ago • written 12 weeks ago by imichalop0
0
gravatar for Jennifer Hillman Jackson
12 weeks ago by
United States
Jennifer Hillman Jackson23k wrote:

Hello,

Whoever published this at youtube left some comments about the tutorial being problematic. Troubleshooting community tutorials can involve many factors that are beyond the scope of what we can help with here. I do see that you left them a comment, and they might be able to help you if you choose to stick with that tutorial version.

But as an alternative, we strongly suggest that you consider using the curated set of tutorials here: https://galaxyproject.org/learn/

Thanks, Jen, Galaxy team

ADD COMMENTlink written 12 weeks ago by Jennifer Hillman Jackson23k
0
gravatar for imichalop
12 weeks ago by
imichalop0
Biomedical Research Foundation, Academy of Athens, Athens, Greece
imichalop0 wrote:

Dear Jen,

Thank you for your help. I will use your tutorials, as you suggested.

Best,

Ioannis

ADD COMMENTlink modified 12 weeks ago • written 12 weeks ago by imichalop0
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