Question: Tuxedo2 workflow cannot run in Galaxy
0
gravatar for imichalop
6 months ago by
imichalop0
Biomedical Research Foundation, Academy of Athens, Athens, Greece
imichalop0 wrote:

Dear Galaxy users,

I try to follow this RNA seq tutorial:

I was able to upload the GFF and FASTQ files and to import "DEG:Tuxedo2 - 2 Conditions 3 Replicates each" workflow. When I try to run Tuxedo2 though, I get this error message:

Uncaught exception in exposed API method:

Any idea what goes wrong?

Ioannis

rna-seq software error galaxy • 194 views
ADD COMMENTlink modified 6 months ago • written 6 months ago by imichalop0
0
gravatar for Jennifer Hillman Jackson
6 months ago by
United States
Jennifer Hillman Jackson24k wrote:

Hello,

Whoever published this at youtube left some comments about the tutorial being problematic. Troubleshooting community tutorials can involve many factors that are beyond the scope of what we can help with here. I do see that you left them a comment, and they might be able to help you if you choose to stick with that tutorial version.

But as an alternative, we strongly suggest that you consider using the curated set of tutorials here: https://galaxyproject.org/learn/

Thanks, Jen, Galaxy team

ADD COMMENTlink written 6 months ago by Jennifer Hillman Jackson24k
0
gravatar for imichalop
6 months ago by
imichalop0
Biomedical Research Foundation, Academy of Athens, Athens, Greece
imichalop0 wrote:

Dear Jen,

Thank you for your help. I will use your tutorials, as you suggested.

Best,

Ioannis

ADD COMMENTlink modified 6 months ago • written 6 months ago by imichalop0
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