Question: How to add my reference genome to use RNA STAR in usegalaxy.org
0
gravatar for hoonilk
6 months ago by
hoonilk0
hoonilk0 wrote:

"If your genome of interest is not listed, contact the Galaxy team (--genomeDir)" It is my first RNA-seq analysis using usegalaxy.org. I tried to use RNA STAR, but there was no reference genome that I am interested in. Moreover, I am not sure the mean of "contact the Galaxy team (--genomeDir)"
Should I ask Galaxy team to add the reference genome to usegalaxy.org system? what is the (--genomeDir)?

genome custom custom-genome • 251 views
ADD COMMENTlink modified 6 months ago by Jennifer Hillman Jackson24k • written 6 months ago by hoonilk0
0
gravatar for Jennifer Hillman Jackson
6 months ago by
United States
Jennifer Hillman Jackson24k wrote:

Hello,

Upload the genome in fasta format into your history and use it with tools as a Custom genome/build.

https://galaxyproject.org/support/ >> Preparing and using a Custom Reference Genome or Build

Thanks, Jen, Galaxy team

ADD COMMENTlink written 6 months ago by Jennifer Hillman Jackson24k
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