Question: How to add my reference genome to use RNA STAR in
gravatar for hoonilk
13 months ago by
hoonilk0 wrote:

"If your genome of interest is not listed, contact the Galaxy team (--genomeDir)" It is my first RNA-seq analysis using I tried to use RNA STAR, but there was no reference genome that I am interested in. Moreover, I am not sure the mean of "contact the Galaxy team (--genomeDir)"
Should I ask Galaxy team to add the reference genome to system? what is the (--genomeDir)?

genome custom custom-genome • 610 views
ADD COMMENTlink modified 13 months ago by Jennifer Hillman Jackson25k • written 13 months ago by hoonilk0
gravatar for Jennifer Hillman Jackson
13 months ago by
United States
Jennifer Hillman Jackson25k wrote:


Upload the genome in fasta format into your history and use it with tools as a Custom genome/build. >> Preparing and using a Custom Reference Genome or Build

Thanks, Jen, Galaxy team

ADD COMMENTlink written 13 months ago by Jennifer Hillman Jackson25k
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