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Question: genome of interest is not listed
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gravatar for jiezhou68
18 months ago by
jiezhou68 • 0
jiezhou68 • 0 wrote:

Dear Galaxy team and Galaxy community,

I reply on the notice found in HISAT: "If your genome of interest is not listed, contact the Galaxy team.".

Genome of my interest: D.magna. It was recently(2016) submitted into NCBI: http://server7.wfleabase.org/genome/Daphnia_magna/openaccess/genes/Genome/genbank_submit/

Could you add it as an item to select in HISAT feature and in other ones related to RNA-seq?

Thanks

Jie
rna-seq alignment • 384 views
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modified 18 months ago by Jennifer Hillman Jackson ♦ 25k • written 18 months ago by jiezhou68 • 0
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gravatar for Jennifer Hillman Jackson
18 months ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

For this genome, it is best to use it as a custom reference genome. This is how: https://galaxyproject.org/learn/custom-genomes/

Thanks! Jen, Galaxy team
ADD COMMENT • link written 18 months ago by Jennifer Hillman Jackson ♦ 25k
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