Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Forum
Planet
All »
Home
Log In
Question: Heatmap using cummeRbund
0
gravatar for mvinas
17 months ago by
mvinas • 20
mvinas • 20 wrote:

Hello,

I want to do a heatmap using cummeRbund.

Is it possible to select a set of genes (for example only the significantly expressed ones) or it is only possible to do it one by one?

Thanks in advance,

Maria Vinas
rna-seq • 617 views
ADD COMMENT • link •
modified 10 months ago by domi84 • 40 • written 17 months ago by mvinas • 20
0
gravatar for domi84
10 months ago by
domi84 • 40
Glasgow University
domi84 • 40 wrote:

Hi, you can use cummeRbund directly on Galaxy only selecting genes one by one, otherwise you need to download and use cummeRbund with R. As an alternative I wrote a Python module named Papillon available here . Should be easy to use. Best Regards Dom
ADD COMMENT • link written 10 months ago by domi84 • 40
Please log in to add an answer.

Similar posts • Search »

Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 175 users visited in the last hour