Hi, I am using Bismark bisulfite mapper (bowtie2) (Galaxy Version 0.10.2) in a local installation. I am having trouble by renaming the output datasets (in the section of Configure Output). Info at Galaxy says that “Valid inputs are: refGenomeSource|ownFile, singlePaired|mate_list_0|input_mate1, singlePaired|mate_list_0|input_mate2”
I tried few of them in the following format, but I could not get it work.
What I get is only the extensions after “.” Is there any advice on this? Thanks.