Question: Trouble renaming the dataset output from Naive Variant Caller in Workflow
gravatar for paul.grant
3.1 years ago by
United Kingdom
paul.grant10 wrote:


I am having trouble renaming the Dataset outputs from 'Naive Variant Caller' in the Galaxy workflow editor.

I am using the server

Under Add Actions "output_vcf" Rename Dataset I have tried '#{input_bam}.vcf'  but I always just get .vcf as an output, not the name of the .bam file I have used. I am using a single bam file.

The only thing that does work is using '#{ref_file}.vcf' but as my ref file is the same for all my analysis this does not help.

Any advise would be welcome.



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