Question: Trouble renaming the dataset output from Naive Variant Caller in Workflow
1
paul.grant • 10 wrote:
Hi
I am having trouble renaming the Dataset outputs from 'Naive Variant Caller' in the Galaxy workflow editor.
I am using the usegalaxy.org server
Under Add Actions "output_vcf" Rename Dataset I have tried '#{input_bam}.vcf' but I always just get .vcf as an output, not the name of the .bam file I have used. I am using a single bam file.
The only thing that does work is using '#{ref_file}.vcf' but as my ref file is the same for all my analysis this does not help.
Any advise would be welcome.
Thanks
Paul