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Question: Bismark Error: Data Table Named 'Bismark_Bs_Indeces' Is Required By Tool But Not Configured.
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gravatar for Sachit Adhikari
6.0 years ago by
Sachit Adhikari • 320
Sachit Adhikari • 320 wrote:
Hi all, I am seeing this error while clicking on Bismark in Galaxy. I got the Bismark for galaxy tool shed. I tried to get another bismark wrapper developed by Bjoern. I didnt know how to download that. What's the error? Thanks
galaxy • 902 views
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modified 6.0 years ago by Greg Von Kuster ♦ 810 • written 6.0 years ago by Sachit Adhikari • 320
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gravatar for Greg Von Kuster
6.0 years ago by
Greg Von Kuster ♦ 810
Penn State University
Greg Von Kuster ♦ 810 wrote:
Hello Sachit, It looks like you installed this from the test tool shed since it is not available on the main tool shed. Assuming I've located the repository you installed, it looks like you'll have to manually add the following entry into your tool_data_table_conf.xml file. This should have been done automatically for you when you installed the repository, but I'm not sure why it didn't. Maybe you're running an older version of Galaxy that doesn't include this automated feature. Greg Von Kuster <columns>value, dbkey, name, path</columns> <file path="tool-data/bismark_bs_indeces.loc"/>
ADD COMMENT • link written 6.0 years ago by Greg Von Kuster ♦ 810
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