Question: renaming datasets in workflows, small probelm with Unified Genotyper and output_vcf
gravatar for Guy Reeves
3.7 years ago by
Guy Reeves1.0k
Guy Reeves1.0k wrote:


I have been successfully following the renaming datasets in workflows advice , it is very very useful capacity.

However I am having trouble renaming the outputs from 'Unified Genotyper'   

I am using the server


'Rename Dataset on output_vcf

Available inputs are:reference_source|input_bams_0|input_bam, reference_source|ref_file'


However I have tried '#{input_bam | basename}_GENO'  and a number of other variations but cannot get it to take any information from the name of the single bam input file I am using.

Of all the tools I have used it is only 'Unified Genotyper'    and 'Plotting tool' that I have have had difficulty follwoing the advice on the above wiki page.

Any advice Thanks Guy

ADD COMMENTlink modified 3.7 years ago by Jennifer Hillman Jackson25k • written 3.7 years ago by Guy Reeves1.0k
gravatar for Jennifer Hillman Jackson
3.7 years ago by
United States
Jennifer Hillman Jackson25k wrote:


I was able to confirm this behavior yesterday. Our team is reviewing the issue. More details will be posted.

Thank you so much for reporting the issue! Jen, Galaxy team

ADD COMMENTlink written 3.7 years ago by Jennifer Hillman Jackson25k
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