Question: Bam to Bedgraph error
0
gravatar for neerajdpatel
20 months ago by
neerajdpatel0 wrote:

Hello,

I am trying to convert bam files to bedgraph files and eventually to bigwig to visualise in IGV. I have used this workflow before with no errors but currently I get an error to say there are 'no tabular datasets available' for the genome file.

Is this an ongoing error?

Many thanks

bedtools • 735 views
ADD COMMENTlink written 20 months ago by neerajdpatel0
0
gravatar for Jennifer Hillman Jackson
20 months ago by
United States
Jennifer Hillman Jackson25k wrote:

The tool is probably expecting a two column file listing the chromosomes and lengths and it is not found in the history as an active dataset with the dataype assigned as "tabular".

What exact tool is this coming from in your case? The complete name including version (at the top of the tool form) would be helpful. If you do not find a data problem, there could be a tool problem and we can check that.

Are you working at http://usegalaxy.org or somewhere else (where)?

If a local or cloud galaxy, what version is running/source?

Thanks, Jen, Galaxy team

ADD COMMENTlink modified 20 months ago • written 20 months ago by Jennifer Hillman Jackson25k
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