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• Unable to view aligned reads in IGB after loading BAM file
  Hello everyone, I downloaded an SRA file from a GEO accession and converted it to a BAM file usi...
• An error occurred setting the metadata for FIlter Bam/SAM files
  I am getting error in setting the metadata after filter BAM/SAM files. I tried using auto-detect ...
• ChIP-Seq: Galaxy to IGB Visualization
  Hi All, When trying to view Galaxy generated BAM files (from MACS and/or Star) in IGB, it seems ...
• Displaying bam or bigwig files in UCSD genome browser
  Hello, I am attempting to view my RNAseq mapping file output (SAM) on the UCSC genome browser. T...
• Unable to download bam index file
  I have analysed my RNA seq data using TopHat tool under the NGS- RNA seq analysis heading. After ...
• There is a link to view human hg19 but not hg38 bed files using UCSC. Why?
  I am working my way through the Galaxy 101 tutorial. When I use hg19 data I have the option of vi...
• Viewing BIGWIG files in UCSC
  Hello, Previously I have been able to view BigWig files by clicking on the job, and selecting Di...
• Builtin genome in Galaxy is not displayed in IGB
  Hi, I mapped my peak using MACS in Galaxy using the built-in genome. I can visualize my peaks in...
• adding genomes in igb
  Hi, I am trying to visualize the streptomyces hygroscopicus genome on igb. But IGB doesn't have ...
• BAM index file download leads to Server 500 error
  I am trying to align reads to the TAIR10 Arabidopsis genome with TopHat v2.1.0 (I have an old pro...
• Error in loading data to IGB from Galaxy
  Dear All I have installed Integrated Genome Browser in my local workstation. I uploading the sa...
• Conflict There was a conflict when trying to complete your request. Error generating display_link: type object 'Bam' has no attribute 'name'
  Good afternoon, I keep getting the following error when trying to visualise data using galaxy ma...
• GTF no "view in IGV local" option?
  I have GTF in my history but only: display in IGB View display at Ensembl Current display at UCS...
• View bam files on UCSC genome browser (Galaxy display application)
  Hello folks, I want to view BAM files on UCSC genome browser. I got my BAM files from HISAT2. Bu...
• Getting an excel list of variations from Varscan or FreeBayes .vcf files
  I have whole genome sequence from Saccharomyces cerevisiae strains and I'm looking for their vari...
• To get "display at UCSC main" after uploading .bw ChIP-seq file
  Dear Sir/Madam, I have just recently directly uploaded a couple of bigwig files for ChIP seq dat...
• BED TO BAM INDEXING
  Hello I have encountered a problem when trying to create bam index file. The whole purpose of t...
• Visualizing RNA STAR Bam file
  hi I'm working through the RNA-seq tutorial using the Pasilla knock down example. I have made i...