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Question: To get "display at UCSC main" after uploading .bw ChIP-seq file
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gravatar for charles.vadnais
9 months ago by
charles.vadnais • 10
charles.vadnais • 10 wrote:

Dear Sir/Madam,

I have just recently directly uploaded a couple of bigwig files for ChIP seq data. I would like to view them on UCSC's genome browser, but the link to do this is not available/present (display at UCSC main). Only "display in IGB View" and "display with IGV web current local" are visible. Any help with this issue would be much appreciated.

Many thanks for your time and assistance.

Cheers!
ucsc display metadata database bigwig • 307 views
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modified 9 months ago by Jennifer Hillman Jackson ♦ 25k • written 9 months ago by charles.vadnais • 10
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gravatar for Jennifer Hillman Jackson
9 months ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

Assign the database to the dataset. It must be a match for what is hosted at UCSC.

FAQs: https://galaxyproject.org/support/#getting-inputs-right

  • Common datatypes explained
  • The tool I'm using does not recognize any input datasets. Why?
  • How do I find, adjust, and/or correct metadata?

If that does not resolve the problem, please let us know. We have reports of other file types not loading (VCF) but that is still undergoing testing. Details https://biostar.usegalaxy.org/p/26869

Thanks! Jen, Galaxy team
ADD COMMENT • link written 9 months ago by Jennifer Hillman Jackson ♦ 25k
1

Thanks Jen! Found the answer to my question here as you said! https://galaxyproject.org/support/metadata/

ADD REPLY • link written 9 months ago by charles.vadnais • 10
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