Question: problem encoutered in FASTQ splitter !!
gravatar for souradeep.mis
2.0 years ago by
souradeep.mis40 wrote:

my illumina transcript is not getting splitted by FASTQ splitter?? it has been running for about 10 hours. and still running. I have already re-run it twice but it has no effect. My transcripts is in fastQ format still not. why?? please help, otherwise my work is in pause.

rna-seq fastq splitter galaxy • 617 views
ADD COMMENTlink modified 24 months ago • written 2.0 years ago by souradeep.mis40
gravatar for Jennifer Hillman Jackson
2.0 years ago by
United States
Jennifer Hillman Jackson25k wrote:


Jobs in the queue can take up to 24 hrs to execute (unless there is unusually high load). Stopping and restarting jobs move them back to the end of the queue, extending wait time. Once you launch again, allow the job to process.

That said, there are some issues with Galaxy Main at This may have impacted jobs as of late Weds and now is manifesting as temporary downtime (two distinct issues). Please follow here for details and updates:

Once up again, try a re-run and see if that resolves the problem. Note that many others will be rerunning jobs so the queue will be a bit busier for a few days, producing a high server load and extended wait times (how long depends on many factors).

Our apologies for the inconvenience, Jen, Galaxy team

ADD COMMENTlink written 2.0 years ago by Jennifer Hillman Jackson25k
gravatar for souradeep.mis
24 months ago by
souradeep.mis40 wrote:

Hello, Jennifer. The same problem occurred again when i gave the same job in fastq splitter, it ultimately got terminated after 48 hrs of run. My data was illumina sequenced, fastqsanger format and 7.7 gb. Do we have some altrernative, please do mention. Thank you.

ADD COMMENTlink written 24 months ago by souradeep.mis40
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