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• ChIP-seq sequence data sources
  hi I predict nucleosome using the chip-seq. i need to chip-seq data (bovine) . please tell me ho...
• Yeast genome reference in Bowtie2
  I am trying to do some data analysis of my Chip Seq data in yeast. And I stuck at the alignment s...
• How to do the peak calling with "MACS2 bdgbroadcall" for H3K9me3 ChIP-seq
  Hi, I try to use the MACS2 bdgbroadcall to analyze my H3K9me3 ChIP-seq data, but there is no opti...
• ChIP-Seq: MACS2 refinepeak
  Happy New Year Everyone!! I am reaching out to inquire about the use of the MACS2 refinepeak pac...
• How to know if mapping to reference genome was succesful?
  Given a set of BAM files for single-end reads just mapped with BWA tool, how can I have an overvi...
• Visualization of ChIP seq peaks in IGV
  I want to visualize in IGV the ChIP Seq peak form my data but I don't know what file I have to up...
• How to add a bacterial genome to Galaxy database?
  I have my ChIP-Seq data on Galaxy but can't map it because the bacterial genome that I am working...
• Add Other Genomes To Galaxy
  Hi, Is there any chance to add a new genome reference to the Galaxy browser? I am working on the...
• Ceas In Galaxy
  Is there an option of running CEAS tool in Galaxy I want to annotate selected enriched regions o...
• Galaxy cloud cluster share-string for ChIP-Seq workshop
  Hi Galaxy Community, In the teaching section, I see a lot of excellent workshop and training mat...
• Annotating ChIP seq peaks in Galaxy
  I'm analyzing ChIP seq data using Bowtie and then MACS with the Galaxy web instance, and now want...
• ChIP-seq analysis on small genome
  Hello, I am using Galaxy to analyze ChIP-seq data of a mammalian cell line containing virus episo...
• Downsampling ChIP-seq BAM files with spike in normalization factor before feeding into Diffbind
  I am planning to use exogenous chromatin as a spike in control with my actual sample from mouse t...
• Help with Chip-Seq data analysis without input!
  Hi! I am new in galaxy and I am trying to analyse the sequences of a ChIP-Seq.I have been reading...
• HELP with FastQC Webpage
  Hello, I have created a workflow for ChIP-Seq, yesterday everything worked fine and I was able t...
• Chip-Seq
  Can I analyze two bed files from Chip seq experiemnt in Galaxy? I have one file of input and oth...
• Information
  Dear Sir/Madam, I would like to download the chip seq data from the web links. it comes as aligne...
• Questions about addition of reference genome in Bowtie2
    Now I'm going to analyze my ChIP-seq data with Galaxy, but there is not the species I want on ...
• Running MACS locally
  Hello, I have downloaded my ChIP-seq data which I aligned to the human genome using Bowtie for I...
• Intersect output file
  Hi, When running 'intersect' to compare the ChIP seq data of 2 bed files to find overlapping si...
• ChIP-seq paired-end analysis
  Could you help me to understand how to analyze the data CHIP- seq paired-end on galaxy ? Thank y...