Question: Visualization of ChIP seq peaks in IGV
gravatar for gonzalod
3.8 years ago by
United States
gonzalod0 wrote:

I want to visualize in IGV the ChIP Seq peak form my data but I don't know what file I have to upload for that. I tried a bed file but I see the location but not the actual peak. I am thinking that is either a wig or peak file but I am not sure.

Thanks for any help

chip seq • 4.0k views
ADD COMMENTlink modified 3.8 years ago by Jennifer Hillman Jackson25k • written 3.8 years ago by gonzalod0
gravatar for Jennifer Hillman Jackson
3.8 years ago by
United States
Jennifer Hillman Jackson25k wrote:


Wiggle data is generally what is used for peaks, although there are other types (UCSC has alternates for ENCODE data). The list of accepted file types for IGV are here, but do note that not all are included/produced by tools wrapped for Galaxy:

You might want to contact IGV support if you are having an issue with a particular file.

Take care, Jen, Galaxy team

ADD COMMENTlink written 3.8 years ago by Jennifer Hillman Jackson25k

Thank you Jennifer! 

ADD REPLYlink written 3.8 years ago by gonzalod0
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 171 users visited in the last hour