Ceas In Galaxy

7.1 years ago by

United States

Jennifer Hillman Jackson ♦ 25k wrote:

Hello, This particular tool group from is not incorporated, but many similar components exist as tools in Galaxy. In particular, the "Operate on Genomic Intervals -> Profile Annotations for a set of genomic intervals" tool may be useful. If not, then importing a gene track (UCSC, ENSEMBL, etc.) and using the other operations in this tool group can bring together annotation features. Hopefully this gives some options for your project, Jen Galaxy team -- Jennifer Jackson http://usegalaxy.org http://galaxyproject.org/wiki/Support

ADD COMMENT • link written 7.1 years ago by Jennifer Hillman Jackson ♦ 25k

Cistrome (instance of GALAXY) has CEAS included. Ian ________________________________________ To: shamsher jagat Cc: galaxy-user@bx.psu.edu Subject: Re: [galaxy-user] CEAS in Galaxy Hello, This particular tool group from is not incorporated, but many similar components exist as tools in Galaxy. In particular, the "Operate on Genomic Intervals -> Profile Annotations for a set of genomic intervals" tool may be useful. If not, then importing a gene track (UCSC, ENSEMBL, etc.) and using the other operations in this tool group can bring together annotation features. Hopefully this gives some options for your project, Jen Galaxy team -- Jennifer Jackson http://usegalaxy.org http://galaxyproject.org/wiki/Support ___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/

ADD REPLY • link written 7.1 years ago by Ian Donaldson • 120

Thank you, Ian! Shamsher, here is the link to the project: http://cistrome.org/ This is another instance of Galaxy, so a new registration/login will be required if you do not already have one for this site. http://galaxyproject.org/wiki/Public%20Galaxy%20Servers Great! Jen Galaxy team -- Jennifer Jackson http://usegalaxy.org http://galaxyproject.org/wiki/Support

ADD REPLY • link written 7.1 years ago by Jennifer Hillman Jackson ♦ 25k

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