Question: Intersect output file
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jacob.evans • 0 wrote:
Hi,
When running 'intersect' to compare the ChIP seq data of 2 bed files to find overlapping sites, I manage to get galaxy to produce an output file. However, I noticed that the data in the output file appears to be exactly the same as the first file uploaded into intersect. I confirmed this by uploading the intersect BED, the 1st and 2nd files being compared, into encode and see that the tracks for the intersect and the 1st file are the same. Is there anyway that I may be running this incorrectly?
Thanks