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Question: Conflict There was a conflict when trying to complete your request. Error generating display_link: type object 'Bam' has no attribute 'name'
0
gravatar for daniel.tonge
2.5 years ago by
daniel.tonge • 10
daniel.tonge • 10 wrote:

Good afternoon,

I keep getting the following error when trying to visualise data using galaxy main - this also occurs if I try to select view in UCSC / Ensemble / IGB;

Conflict

There was a conflict when trying to complete your request. Error generating display_link: type object 'Bam' has no attribute 'name'

Any help would be very much appreciated.

Dan
rna-seq • 1.5k views
ADD COMMENT • link •
modified 2.2 years ago by annen • 0 • written 2.5 years ago by daniel.tonge • 10
0
gravatar for Jennifer Hillman Jackson
2.5 years ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

I am unable to reproduce this with a general test history. Would you please send in a shared link for the history containing this BAM dataset? Also include the dataset number and a link to this Biostars post in the comments. Email to galaxy-bugs@lists.galaxyproject.org.

How to share: https://wiki.galaxyproject.org/Learn/Share

Thanks, Jen, Galaxy team
ADD COMMENT • link written 2.5 years ago by Jennifer Hillman Jackson ♦ 25k
0
gravatar for daniel.tonge
2.5 years ago by
daniel.tonge • 10
daniel.tonge • 10 wrote:

Link emailed as requested. Many thanks for your prompt reply.

Best wishes,

D
ADD COMMENT • link written 2.5 years ago by daniel.tonge • 10
0
gravatar for annen
2.2 years ago by
annen • 0
annen • 0 wrote:

Hi-

I am having the exact same problem. Did yours ever get resolved?

Thanks, Anne
ADD COMMENT • link written 2.2 years ago by annen • 0

It was due to a rare cluster issue that still may occur. There are two things to try:

  • First attempt to reset the metadata on the dataset. Do this by clicking on the pencil icon for the dataset to reach the Edit Attributes form. On the first tab is a button named "Auto-detect". Click this and allow the dataset to resolve, then try to use it.

  • If this fails, then either reload the BAM dataset (if uploaded) or re-run the job that created it.

Thanks, Jen, Galaxy team

ADD REPLY • link modified 2.2 years ago • written 2.2 years ago by Jennifer Hillman Jackson ♦ 25k
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