Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Forum
Planet
All »
Home
Log In
Question: X. laevis v9 genome alignment on galaxy
0
gravatar for schittur
2.5 years ago by
schittur • 0
schittur • 0 wrote:

HI, Could you upload the x. laevis v9 genome available at Xenbase (ftp://ftp.xenbase.org/pub/Genomics/JGI/Xenla9.1/1.8.3/XL9.1_v3.transcripts.primary.mRNA.fa.gz) on to Galaxy? I would like to align my Illumina fastq files to this genome. Thanks Sridar
rna-seq galaxy • 531 views
ADD COMMENT • link •
modified 2.5 years ago by Jennifer Hillman Jackson ♦ 25k • written 2.5 years ago by schittur • 0
0
gravatar for Jennifer Hillman Jackson
2.5 years ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

The genome (not transcriptome) has been added to the list of new genomes to review and index: https://github.com/galaxyproject/galaxy/issues/1470

Meanwhile, please use the Custom Genome/Build functions with tools: https://wiki.galaxyproject.org/Support#Custom_reference_genome

Thanks, Jen, Galaxy team
ADD COMMENT • link written 2.5 years ago by Jennifer Hillman Jackson ♦ 25k
Please log in to add an answer.

Similar posts • Search »

Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 175 users visited in the last hour