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• Adding Danrer7 As A Reference Genome For Tophat2
  Can you add danrer7 as a reference genome for tophat2 for online Galaxy? Its there for tophat fo...
• Missing genome in Tophat2
  Hi Galaxy Team, Is there any way to get the latest Zebrafish (Danio rerio) genome added to the r...
• Adding Reference Genome
  Dear sir, please add reference genome of Zebra finch genome in Bowtie2 and Tophat2 option in gala...
• adding tophat2 to galaxy
  I have an online account in galaxy where i am trying to work with an example dataset. I can see t...
• Need help with "Tophat2" tool
  My Galaxy Tophat2 program is not running. Is there is any server problem   Tool name: Tophat2 ...
• Hg19 Reference Gnome For Tophat2
  I downloaded the entire directory of UCSC for the reference gnome of Tophat2. It turns out that t...
• local galaxy tophat2 built-in genome
  Hi, I am new user to do bioinformatic analysis and know a little about python. Right now, I succ...
• Bowtie2 And Tophat2 For Galaxy
  Hello Everyone, Can someone please give me the link to download .py file and the wrapper(.xml) of...
• FASTQ files in history but cannot add to tasks like FASTQ trimmer or TopHat2
  I am a new user and uploaded to large FASTQ files which galaxy recognises as FASTQ files. However...
• Need help with "Tophat2" tool
  I have uploaded fastq file to the galaxy, I can see it on the right "history", but I can not see ...
• Tophat2 jobs not running
  Hi, I have submitted some jobs to Tophat2 on Galaxy, but they have not started for several hours...
• Need help with "Tophat2" tool
  Is there no yeast genome as a reference for using Tophat2 in Galaxy? I only found sc2 and sc3 it ...
• Galaxy Tool Unit Test
  I tried to use the run_tests.sh script to test a specific tool installed from toolshed. But I alw...
• Problem with running TopHat2
  Hi I am running the TopHat2 on Galaxy, i already uploaded the data on my history but whenever i ...
• Need help with "Tophat2" tool - no chicken genome
  Hi, I am new to Galaxy (which is great, thanks!) and I would like to use Tophat2 with chicken da...
• Where is TOPHAT2
  Hey I know that a year or so ago, galaxy gave the option of running TOPHAT2? ... however, I on...
• Need help with "Tophat2" tool
  Hi Galaxy Team:            Rice genome has 12 chromosomes. But our output file from Tophat2 is o...
• Need to Expand Visualization
  Hello,  I recently used tophat2 to align two reads to the rn4 genome. I went through trackster...
• Use whole genome or cDNA sequences for RNAseq alignment
  Hello,    I'm working on my first RNAseq analysis, and I'm unsure of how to proceed with my TopH...
• Running TopHat2 with a GTF file
  Hi everyone,   I am having issues running TopHat 2. I have added the reference genome fasta fil...