Question: Missing genome in Tophat2
gravatar for ashamchu
4.2 years ago by
ashamchu10 wrote:

Hi Galaxy Team,

Is there any way to get the latest Zebrafish (Danio rerio) genome added to the reference genome options in Tophat2?

Thank you!

tophat2 indexes • 1.0k views
ADD COMMENTlink modified 4.2 years ago by Jennifer Hillman Jackson25k • written 4.2 years ago by ashamchu10
gravatar for Jennifer Hillman Jackson
4.2 years ago by
United States
Jennifer Hillman Jackson25k wrote:


This genome is already on our next list of genomes to process, the card is here:

Meanwhile, you can use the genome right now as a Custom Reference Genome.

In short, load the genome in fasta format into your history and use it with the tool settings to use a reference genome "from the history".

The "danRerN" genomes on the public server are sourced from UCSC here:

Or you can obtain our exact version from our rsync server:


Best, Jen, Galaxy team

ADD COMMENTlink written 4.2 years ago by Jennifer Hillman Jackson25k
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