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Question: Where is TOPHAT2
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gravatar for willtun1991
2.3 years ago by
willtun1991 • 10
United Kingdom
willtun1991 • 10 wrote:

Hey

I know that a year or so ago, galaxy gave the option of running TOPHAT2? ... however, I only see Tophat as an option now.

What happened to TOPHAT2? I assume it has been replaced by HISAT2 ...

However, in the interest of repeating a few experiments from a year ago... I really need TOPHAT2 specifically now and I'd like to run it on galaxy. Is this possible in any way?

Thanks Will

rna-seq tophat • 522 views
ADD COMMENT • link •
modified 2.3 years ago by Martin Čech ♦♦ 4.9k • written 2.3 years ago by willtun1991 • 10
1
gravatar for Martin Čech
2.3 years ago by
Martin Čech ♦♦ 4.9k
United States
Martin Čech ♦♦ 4.9k wrote:

this is Galaxy tool that runs tophat (Version 2.1.0)

I think the tophat version 1 has been hidden as it is superseded by tophat version 2 and above.
ADD COMMENT • link modified 2.3 years ago • written 2.3 years ago by Martin Čech ♦♦ 4.9k
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