I have list of such Id's obtained from ENSRNOG00000000000 and I want
to get the information of the transcription coordinates. So how can I
get in Galaxy or can I get it directly from UCSC ???
@IGIB Delhi, INDIA
As Brad mentioned, these are Ensembl gene identifiers which would link
to at least one, and perhaps more than one, Ensembl transcript. It
be the transcripts that are actually mapped to the genome and that
UCSC or Biomart - each of these have methods to input gene identifiers
and get out the transcript information (including coordinates). Galaxy
can access these through the tool "Get Data". Enter the identifiers
the tools themselves and send result data back into your Galaxy
When using UCSC, use the track "Ensembl Genes" and paste in the gene
name list (up to 1000 at a time).
To get a full picture of what is happening in these regions once you
have the coordinate intervals of the genomic footprints, the tool
"Operate on Genomic Intervals -> Profile Annotations" is highly
recommended. This tool will get all sorts of annotation for coordinate
regions in one go. Really great for confirming and comparing data
between sources and pulling in new information to a project.
Hopefully this helps, but if you need more help, please let us know,