Small Rna Gene, Trna Genes

Question: Small Rna Gene, Trna Genes

8.8 years ago by

Hi, I would appreciate any suggestion how one can use Galaxy to obtain coordinates of human and mouse of all known tRNAs. Similarly how one can do that for other types such as miRNAs and other small RNAs . Thanks, Yuval This email message, including any attachments, is for the sole use of the intended recipient(s) and may contain information that is proprietary, confidential, and exempt from disclosure under applicable law. Any unauthorized review, use, disclosure, or distribution is prohibited. If you have received this email in error please notify the sender by return email and delete the original message. Please note, the recipient should check this email and any attachments for the presence of viruses. The organization accepts no liability for any damage caused by any virus transmitted by this email. =================================

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modified 8.7 years ago by Steve Taylor • 240 • written 8.8 years ago by Kluger, Yuval • 10

8.8 years ago by

Guruprasad Ananda • 230

Guruprasad Ananda • 230 wrote:

Hi Yuval, You should be able to retrieve RNA co-ordinates using the interface to UCSC genome browser under 'Get data' section on Galaxy. For information on which tracks and tables to choose, please refer these links which contain answers to this topic from UCSC mailing list: http://www.soe.ucsc.edu/pipermail/genome/2007-August/014299.html http://www.soe.ucsc.edu/pipermail/genome/2007-May/013491.html http://www.soe.ucsc.edu/pipermail/genome/2006-April/010436.html Thanks for using Galaxy, Guru Galaxy team. Guruprasad Ananda Graduate Student Bioinformatics and Genomics The Pennsylvania State University

ADD COMMENT • link written 8.8 years ago by Guruprasad Ananda • 230

8.7 years ago by

Steve Taylor • 240

Steve Taylor • 240 wrote:

Hi, I notice in the Galaxy distribution there is support for EMBOSS 5. Is there planned support for EMBOSS 6? Kind regards and thanks, Steve

ADD COMMENT • link written 8.7 years ago by Steve Taylor • 240

Stephen: Yes, this will eventually take place. We will be talking to Peter Rice about joining forces with EMBOSS project so that we are in sync with the latest builds. Thanks, anton galaxy team Anton Nekrutenko http://nekrut.bx.psu.edu http://usegalaxy.org

ADD REPLY • link written 8.7 years ago by Anton Nekrutenko ♦ 1.7k

Hi, Thanks. That's good news! Steve

ADD REPLY • link written 8.7 years ago by S Taylor • 20

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