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Question: Downloading The Gene Coordinates Of The Rice Genome
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gravatar for maheshi dassanayake
6.0 years ago by
maheshi dassanayake • 10
maheshi dassanayake • 10 wrote:
Dear Galaxy users, Does anyone know how I can download the gene coordinates for the genome build: oryza_sativa_japonica_nipponbare_IRGSP4.0. Thanks a lot for your help. maheshi
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modified 6.0 years ago by Loraine, Ann • 60 • written 6.0 years ago by maheshi dassanayake • 10
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gravatar for Loraine, Ann
6.0 years ago by
Loraine, Ann • 60
Loraine, Ann • 60 wrote:
Hello, This may be useful: Integrated Genome Browser (the "display in IGB" link) has gene models for IRG4.0 in BED format: http://www.igbquickload.org/quickload/O_sativa_japonica_Jun_2009/O_sat iva_japonica_Jun_2009.bed.gz The original data were taken from Phytozome.net and reformatted to BED. Best wishes, Ann Ann Loraine, Ph.D. Associate Professor Department of Bioinformatics and Genomics University of North Carolina at Charlotte North Carolina Research Campus 600 Laureate Way Kannapolis, NC 28081 704-250-5750 aloraine@uncc.edu http://www.transvar.org http://www.bioviz.org http://www.uncc.edu Date: Mon, 10 Dec 2012 12:45:37 -0500 To: <galaxy-user@lists.bx.psu.edu<mailto:galaxy- user@lists.bx.psu.edu="">> Subject: [galaxy-user] Downloading the gene coordinates of the rice genome Dear Galaxy users, Does anyone know how I can download the gene coordinates for the genome build: oryza_sativa_japonica_nipponbare_IRGSP4.0. Thanks a lot for your help. maheshi ___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
ADD COMMENT • link written 6.0 years ago by Loraine, Ann • 60
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