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Question: Megablast Question
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gravatar for shamsher jagat
6.6 years ago by
shamsher jagat • 590
United States
shamsher jagat • 590 wrote:
Hi, I am using megablast and was wondering how can I get chromosome number and coordinates of its hits. Thanks Shamesher
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modified 6.6 years ago by Jennifer Hillman Jackson ♦ 25k • written 6.6 years ago by shamsher jagat • 590
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gravatar for Jennifer Hillman Jackson
6.6 years ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:
Hi Vasu, The three primary megablast databases available on the public main Galaxy instance are comprised of individual fragments/sequences of different types from many species (not assembled genomes): http://user.list.galaxyproject.org/Question-about-megablast- td4543260.html If you want to use megablast to map against specific assembled genomes, then using a local or (better) cloud instance is recommended. In your own instance, the individual genomes would be set up the way that the 'phiX174' is set up on main. To get started, please see: http://getgalaxy.org Does this address your question? If not, perhaps you could explain more what your goal is and we can try to offer help or confirm that this is the best path? Regards, Jen Galaxy team
ADD COMMENT • link written 6.6 years ago by Jennifer Hillman Jackson ♦ 25k
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