Question: Megablast Question
gravatar for shamsher jagat
6.6 years ago by
United States
shamsher jagat590 wrote:
Hi, I am using megablast and was wondering how can I get chromosome number and coordinates of its hits. Thanks Shamesher
ADD COMMENTlink modified 6.6 years ago by Jennifer Hillman Jackson25k • written 6.6 years ago by shamsher jagat590
gravatar for Jennifer Hillman Jackson
6.6 years ago by
United States
Jennifer Hillman Jackson25k wrote:
Hi Vasu, The three primary megablast databases available on the public main Galaxy instance are comprised of individual fragments/sequences of different types from many species (not assembled genomes): td4543260.html If you want to use megablast to map against specific assembled genomes, then using a local or (better) cloud instance is recommended. In your own instance, the individual genomes would be set up the way that the 'phiX174' is set up on main. To get started, please see: Does this address your question? If not, perhaps you could explain more what your goal is and we can try to offer help or confirm that this is the best path? Regards, Jen Galaxy team
ADD COMMENTlink written 6.6 years ago by Jennifer Hillman Jackson25k
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