Similar posts • Search »

• Need help with "Cufflinks" tool
      Tool name: Cufflinks Tool version: 0.0.7 Tool ID: toolshed.g2.bx.psu.edu/repos/devteam/cuf...
• Cufflink on RNA-seq
  What difference betwen reference annotation file and reference genome file on cufflinks? And how ...
• Version Tophat And Cufflinks
  Hi,   May I ask what is the version of TopHat and cufflinks in the galaxy? Thanks a lot! weimin zhao
• cufflink and tophat queueing more than 24hrs
  cufflink queue is not working. I have been trying to run tophat and cufflink since last 2 days, n...
• How to add reference annotation in cufflinks
  how to add reference annotation in cufflink ? I am trying to put my Hisat2 output file in cufflin...
• Re: Looking For New Transcripts With Cufflinks
  Of course - Doh! Many thanks!!
• Cufflinks Version
  What version of cufflinks is available on the galaxy site? Is there any page where I can find ve...
• Delay in Cufflink jobs
  Some Cufflink jobs have not started yet since initial submission over 18 hours ago. Any problems?
• time to run cufflinks
  How long does it take to run cufflinks? It has been submitted for 48 hours and still has the gra...
• Need help with "Cufflinks" tool
  Hi, How long does it take usually that GALAXY upgrade with a new version of Cufflink (version 2....
• cufflink trancript analysis
  Dear sir, i have run my cufflink analysis on friday but my job does not execute... please help me...
• isoforms with cufflinks
  i used the cufflinks tool to create the isoforms. how can i know how many isoforms were created? ...
• Cufflink not running
  Dear galaxy admin and user, Cufflink is not running for two particular datasets. While cufflink ...
• How to find and extract novel transcript from cufflink and cuffdiff.
  I am analyzing Arabidopsis Rnaseq data. I was running Tophat and cufflinks, but after that I don'...
• How to get Cufflinks to show gene ID?
  How can I get Cufflinks to show the gene ID for each sample and not the Cufflinks ID? I have used...
• No Cufflinks data
  Hello, I have been trying to use Cufflinks for my files from FasqToSam but I I have not been ab...
• Re: Running Cufflinks On A Genome Without A Bowtie Index
  Noa, Using your FASTA in Tophat and Cufflinks is the correct approach. You don't need to provide...
• Need help with "Cufflinks" tool
  What value does Galaxy use for -max-bundle-frags? I could not find a way of changing this paramet...
• Cufflinks Reference Annotation
  HI guys, how do we know when to select a refernce annotation when running cufflinks?And if yes, w...
• Cufflinks Visualization
  Hi all, can anyone explain me wh how can I visualize cufflinks outputs in trackster? galaxy keep ...
• mm9 gtf for cufflinks
  Hi,    Where can i get mm9 gtf file that's compatible with cufflinks? The iGenome site does not ...
• cufflinks-job submission failed
  Hi I have a problem when I tried to run cufflinks. It says job submission failed, please contact...