i have followed download data then tophat cufflink cuffdiff workflow.
my job is running past 3 days in cuffdff.
it is grey in color. how long will it take.
what should i do.
I am experiencing the same problem and the galaxy team is aware of this problem. I was told that there is a connectivity problem with the recently updated resources on the server(?). It seems like we will need to wait until problem is resolved.
The issue has been resolved. Please see this post for how to proceed: A: Jobs caught in long term grey zone (!)
Thanks, Jen, Galaxy team