Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Forum
Planet
All »
Home
Log In
Question: Convert Formats
0
gravatar for Liron Levkovitz
12.2 years ago by
Liron Levkovitz • 10
Liron Levkovitz • 10 wrote:
Hello, I'm trying to convert an AXT format file to FASTA . The AXT file include a table with 2,321,097 lines (It's the results of a blastz alignment between hg18 and mm8). Can you give me an estimation of how long it would take? Does it make since that it takes a few days? Thanks in advance, Liron Levkovitz Tel- Aviv University
• 669 views
ADD COMMENT • link •
modified 12.2 years ago by Anton Nekrutenko ♦ 1.7k • written 12.2 years ago by Liron Levkovitz • 10
0
gravatar for Anton Nekrutenko
12.2 years ago by
Anton Nekrutenko ♦ 1.7k
Penn State
Anton Nekrutenko ♦ 1.7k wrote:
Liron: This should be fairly fast. But let us check. Could you please send us the url for the Galaxy history item that contains 2,321,097 lines. You can do this by right-clicking on the eye icon, choosing "Copy link location", and pasting it into your e-mail. Thanks for your feedback. Anton Nekrutenko Assistant Professor Department of Biochemistry and Molecular Biology Center for Comparative Genomics and Bioinformatics 505 Wartik Building PennState University University Park, PA 16802 814 865-4752 814 863-6699 FAX anton@bx.psu.edu http://www.bx.psu.edu/~anton http://g2.bx.psu.edu
ADD COMMENT • link written 12.2 years ago by Anton Nekrutenko ♦ 1.7k
Please log in to add an answer.

Similar posts • Search »

Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 165 users visited in the last hour