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Question: Estimating Tophat execution run-time
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gravatar for julieac1
2.1 years ago by
julieac1 • 0
julieac1 • 0 wrote:

I was wondering how long it usually takes to map a read on TopHat? It has been over 12 hours and the job is it running.
tophat run-time job execution • 691 views
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modified 2.1 years ago by Jennifer Hillman Jackson ♦ 25k • written 2.1 years ago by julieac1 • 0
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gravatar for Jennifer Hillman Jackson
2.1 years ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

How long a job takes to process depends on the input content/size, the tool parameters, how large/finished the target genome is, and the compute environment. This all makes estimations about how long a job should run difficult.

The best advice is to allow launched jobs to complete. Stopping and restarting will put the job at the back of the queue again, and then the whole processing starts again, increasing the delay.

Details: https://wiki.galaxyproject.org/Support#Dataset_status_and_how_jobs_execute

Best, Jen, Galaxy team
ADD COMMENT • link written 2.1 years ago by Jennifer Hillman Jackson ♦ 25k
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