Question: Estimating Tophat execution run-time
gravatar for julieac1
2.1 years ago by
julieac10 wrote:

I was wondering how long it usually takes to map a read on TopHat? It has been over 12 hours and the job is it running.

tophat run-time job execution • 691 views
ADD COMMENTlink modified 2.1 years ago by Jennifer Hillman Jackson25k • written 2.1 years ago by julieac10
gravatar for Jennifer Hillman Jackson
2.1 years ago by
United States
Jennifer Hillman Jackson25k wrote:


How long a job takes to process depends on the input content/size, the tool parameters, how large/finished the target genome is, and the compute environment. This all makes estimations about how long a job should run difficult.

The best advice is to allow launched jobs to complete. Stopping and restarting will put the job at the back of the queue again, and then the whole processing starts again, increasing the delay.


Best, Jen, Galaxy team

ADD COMMENTlink written 2.1 years ago by Jennifer Hillman Jackson25k
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