Question: Human genome RNA Seq fastq file
gravatar for styliae
4.4 years ago by
United States
styliae0 wrote:

How long does it take to upload and visualize a human genome FASTq file in Galaxy? Thank you.

rna-seq • 1.5k views
ADD COMMENTlink modified 4.4 years ago by Martin Čech ♦♦ 4.9k • written 4.4 years ago by styliae0
gravatar for fubar
4.4 years ago by
fubar1.1k wrote:

Specifics matter a lot in trying to answer your question so perhaps you should measure this yourself with your own data and setup because like "how long is a piece of string", the answer varies, depending on the specifics of the string. On my local lightly loaded Galaxy instance, from upload to visualisation might take an hour for a 5GB fastq but YMMV.

Uploads are interweb dependant and Trackster takes a while to generate indexes, so it might take a few minutes to a few days depending on specifics such as how large a fastq file and whether it needs grooming; the workload on the specific Galaxy instance; the quality of the internet connection and so on.



ADD COMMENTlink written 4.4 years ago by fubar1.1k
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