I would like to fill the file job_conf.xml to use htcondor as scheduler. I know there is a possibility to specify the destination for specific tools in this file, for example :
<tools> <tool id="bamtofastq" destination="local"/> <tool id="prinseq" destination="condor"/> </tools>
Here, I wonder what is the tool_id. When I look at the shed_tool_conf.xml I have for example :
<tool file="toolshed.g2.bx.psu.edu/repos/devteam/bwa/ca29c55c78e7/bwa/bwa-mem.xml" guid="toolshed.g2.bx.psu.edu/repos/devteam/bwa/bwa_mem/0.4.1"> <tool_shed>toolshed.g2.bx.psu.edu</tool_shed> <repository_name>bwa</repository_name> <repository_owner>devteam</repository_owner> <installed_changeset_revision>ca29c55c78e7</installed_changeset_revision> <id>toolshed.g2.bx.psu.edu/repos/devteam/bwa/bwa_mem/0.4.1</id> <version>0.4.1</version> </tool>
So there is an ID here, but in tool_conf.xml we have xml files specified, and the id is specified within them :
<tool id="comp1" name="Compare two Datasets" version="1.0.2"> <description>to find common or distinct rows</description>
So, I wonder what is the tool_id that i should write in the job_conf.xml ... Do you have any guidance about how to do this properly ?