I need to convert fastq files to fastqsanger before mapping with Tophat but I'm working on the Mississippi server and it's not on the menu as an option. Can anyone shed any light?
Thanks Jen I'll give that a go!
FastQ Groomer is present on the Mississippi server, see here: https://mississippi.snv.jussieu.fr/root?tool_id=toolshed.g2.bx.psu.edu/repos/devteam/fastq_groomer/fastq_groomer/1.0.4
Mississppi admin Christophe kindly added this for me this morning - thanks
Awesome! Thanks for letting us know.