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Question: no fast groomer on galaxy (Mississippi server)
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gravatar for l.atkinson
3.2 years ago by
l.atkinson • 10
European Union
l.atkinson • 10 wrote:

Hi,

 

I need to convert fastq files to fastqsanger before mapping with Tophat but I'm working on the Mississippi server and it's not on the menu as an option. Can anyone shed any light?

 

Thanks
galaxy fastq groomer • 769 views
ADD COMMENT • link •
modified 3.2 years ago by Martin Čech ♦♦ 4.9k • written 3.2 years ago by l.atkinson • 10

Thanks Jen I'll give that a go!

 

ADD REPLY • link written 3.2 years ago by l.atkinson • 10
1
gravatar for Martin Čech
3.2 years ago by
Martin Čech ♦♦ 4.9k
United States
Martin Čech ♦♦ 4.9k wrote:

FastQ Groomer is present on the Mississippi server, see here: https://mississippi.snv.jussieu.fr/root?tool_id=toolshed.g2.bx.psu.edu/repos/devteam/fastq_groomer/fastq_groomer/1.0.4
ADD COMMENT • link written 3.2 years ago by Martin Čech ♦♦ 4.9k

Hi Martin,

Mississppi admin Christophe kindly added this for me this morning - thanks 

Louise

 

ADD REPLY • link written 3.2 years ago by l.atkinson • 10

Awesome! Thanks for letting us know.

ADD REPLY • link written 3.2 years ago by Martin Čech ♦♦ 4.9k
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