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• Tool error: Remote job server indicated a problem running or monitoring this job.
  Hi, I'm trying to use Cufflinks and TopHat several times since last Friday, Feb. 24th. However, ...
• mapping tools error: "Remote job server indicated a problem running or monitoring this job"
  Hi, I'm trying to use bwa or bowtie to align paired collection of reads. However, I am continual...
• Server Error When Running Workflow
  Hello, I'm using Galaxy main to run some workflows. I'm running into a "Server Error An ...
• EMBOSS 5 Setup Error
  Hey there, I'm trying to install die Emboss 5 tools from the Tool shed to our local galaxy serve...
• Is Trinity currently working?
  I'm trying to run Trinity but keep receiving the following error message: "Remote job server indi...
• Trying to Assemble SRAs with Unicycler
  I'm trying to assemble SRA reads from NCBI and I'm getting the error "Remote job server ind...
• Upload File not working?
  Hello. Does anyone know if there is a problem with the upload file tool? I'm getting an error mes...
• FTP file transfer problem
  I have cloud instance of galaxy running and I want to upload some fastq files to it. I'm using Fi...
• Bug in Cuffdiff in server Main??
  Hi!! I have a problem with Cuffdiff. After to run it, it finished in red and reported this erro...
• Adding tools from the command-line to Galaxy Standalone on Jetstream
  I have created an instance of Galaxy on Jetstream and I have root SSH access. But when I run the ...
• Unicycler genome assembly failure
  Hi all, I have some Illumina reads and Nanopore reads I'd like to assemble using Unicycler. I u...
• Flexbar-Galaxy, Fatal error: Exit code 1
  Good morning, I have a problem with Galaxy, I had installed Flexbar, on "manage installed tool" ...
• HELP! A Runtime Error in Running Unified Genotyper
  Hi, I'm having problems in running the workflow of cloudmap. When it gets to "Unified Genotyper...
• Internal Server Error
  I'm a new user of Galaxy, when i want to load BAI files i have this message : An error occurred...
• Stderr On Samtools Sort
  Dear all, I'm trying to set up samtools sort command on local Galaxy server. But I can not succe...
• Is anyone else having problem with the ftp server?
  Hello, Has anyone else been having problems with the ftp server?  I was using it just fine yeste...
• MACS2 bdgdiff and Diffbind problem - job was terminated because it used more memory than it was allocated
  Hi all. I'm having som trouble running both MACS2 bgddiff and Diffbind. It keeps returning the er...
• Problem using bowtie2
  Hi everyone I´m Miguel, I´m using galaxy for a scholar research. I´m having a problem using bow...
• FTP server problems
  Since Friday evening, I have not been able to upload large files to the FTP server.  I'm using fi...
• Trackster Error: Needlargemem: Trying To Allocate 0 Bytes (Limit: 100000000000)
  I'm having problems getting Trackster working on my own Galaxy instance, so I thought I would che...
• Error when trying to change email: Uncaught exception in exposed API method:
  I'm using usegalaxy.org and trying to change my email to a different email. After I go into pre...
• Having a problem running RepeatMasker from the Galaxy Toolshed
  Hello- I'm trying to run RepeatMasker from the Galaxy Toolshed, (I'm using Cloudman). I'm gettin...