Question: Galaxy Server Error
gravatar for Shibu John
8.5 years ago by
Shibu John20
Shibu John20 wrote:
Hi, I am not able to connect the Galaxy server.. It's showing Internal Server Error Can you please have a look into the same? Thanks, Shibu
galaxy • 1.1k views
ADD COMMENTlink modified 8.5 years ago by Anton Nekrutenko1.7k • written 8.5 years ago by Shibu John20
gravatar for Anton Nekrutenko
8.5 years ago by
Penn State
Anton Nekrutenko1.7k wrote:
Shibu: We experienced disk problems overnight. Galaxy is back to normal. Tx, anton galaxy team Anton Nekrutenko
ADD COMMENTlink written 8.5 years ago by Anton Nekrutenko1.7k
Hi Mingquan, Please send your queries to one of our mailing lists -- galaxy-dev or galaxy-user -- rather than to individuals. That way, more people can see and help you with your questions, you'll likely get a more timely response, and the mailing list archive can serve as a useful repository. Your question about GFF to BED is best addressed to galaxy-user (b/c it's about usage of Galaxy), and your question about Tophat is best addressed to galaxy-dev (b/c it's about setting up a local Galaxy instance). Hence, I've cc'd both lists. Ok, on to your questions: We've got a Galaxy wrapper ready for Tophat version 1.1+ ; it will likely be available in galaxy-central this week. Once you update your version of Galaxy, you'll be able to run Tophat in Galaxy. This appears to be a valid GFF3 file and should work fine. We'll look into this and get back to you. Thanks, J.
ADD REPLYlink written 8.1 years ago by Jeremy Goecks2.2k
There was a bug in our GFF-to-BED converter that was causing this problem. It's been fixed in galaxy-central changeset 4554:3ea6ee14a8b7 and will be available on our public server next time it is updated. Thanks, J.
ADD REPLYlink written 8.1 years ago by Jeremy Goecks2.2k
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