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Question: Galaxy Server Error
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gravatar for Shibu John
8.5 years ago by
Shibu John • 20
Shibu John • 20 wrote:
Hi, I am not able to connect the Galaxy server.. http://main.g2.bx.psu.edu/ It's showing Internal Server Error Can you please have a look into the same? Thanks, Shibu
galaxy • 1.1k views
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modified 8.5 years ago by Anton Nekrutenko ♦ 1.7k • written 8.5 years ago by Shibu John • 20
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gravatar for Anton Nekrutenko
8.5 years ago by
Anton Nekrutenko ♦ 1.7k
Penn State
Anton Nekrutenko ♦ 1.7k wrote:
Shibu: We experienced disk problems overnight. Galaxy is back to normal. Tx, anton galaxy team Anton Nekrutenko http://nekrut.bx.psu.edu http://usegalaxy.org
ADD COMMENT • link written 8.5 years ago by Anton Nekrutenko ♦ 1.7k
Hi Mingquan, Please send your queries to one of our mailing lists -- galaxy-dev or galaxy-user -- rather than to individuals. That way, more people can see and help you with your questions, you'll likely get a more timely response, and the mailing list archive can serve as a useful repository. Your question about GFF to BED is best addressed to galaxy-user (b/c it's about usage of Galaxy), and your question about Tophat is best addressed to galaxy-dev (b/c it's about setting up a local Galaxy instance). Hence, I've cc'd both lists. Ok, on to your questions: We've got a Galaxy wrapper ready for Tophat version 1.1+ ; it will likely be available in galaxy-central this week. Once you update your version of Galaxy, you'll be able to run Tophat in Galaxy. This appears to be a valid GFF3 file and should work fine. We'll look into this and get back to you. Thanks, J.
ADD REPLY • link written 8.1 years ago by Jeremy Goecks • 2.2k
There was a bug in our GFF-to-BED converter that was causing this problem. It's been fixed in galaxy-central changeset 4554:3ea6ee14a8b7 and will be available on our public server next time it is updated. Thanks, J.
ADD REPLY • link written 8.1 years ago by Jeremy Goecks • 2.2k
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