Question: metagenome analysis in Galaxy
gravatar for may2012yang
3.4 years ago by
Korea, Republic Of
may2012yang0 wrote:

Dear ;


I am a biologist and new to Galaxy. 

I have close to 200 paired-end Illumina 16S rRNA-seq fastq files (representing 4 groups), which I have generated through a company.

I want to do all the data QC, preprocessing and eventually do statistical analysis to identify microorganisms that can distinguish the 4 groups.


Could you recommend good workflows in the galaxy?



galaxy • 796 views
ADD COMMENTlink modified 3.4 years ago by Jennifer Hillman Jackson25k • written 3.4 years ago by may2012yang0
gravatar for Jennifer Hillman Jackson
3.4 years ago by
United States
Jennifer Hillman Jackson25k wrote:


In general, help and tutorials can be found through these resources:

Tutorials from the GLV have one for 16S metagenomics that appears to be good match:

Best, Jen, Galaxy team

ADD COMMENTlink written 3.4 years ago by Jennifer Hillman Jackson25k
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