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• Uploading data to Galaxy
  Hi everyone, I am relatively new in RNA-seq data analysis. I have a RNA-seq data set that were p...
• Merge RNA-Seq files in CLC Genomics Workbench ?
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  do u have any Tutorial for PARCLIP analysis with Galaxy? I am new to the Galaxy platform.
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• Analysis of forward and reverse reads
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• (No Subject)
  Dear Galaxy team, I have a question about RNA analysis with the cufflinks package. I have some ...
• problem with TopHat
  I am very sorry to disturb you with these questions, however I am trying to align 4 bam files (af...
• Cuff diff output vs genotype discrepancy
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• Question About Cuffdiff
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• How Should I Include Biological Replicates In Cufflink/Cuffdiff?
  Dear team, I have a few questions regarding RNA-seq data analysis. I want to compare transcripto...
• Fastq formatting problems
  Hello, This is my first experience with Galaxy or really any NGS data analysis, so please excuse...
• Phenotype data for Ballgown tool
  Hello I am doing RNA-seq analysis using local server galaxy. I'm following the new Tuxedo protoco...
• Controlling for batch effects in RNA-Seq data
  Hi, I was hoping that someone might be able to give me some advice on adjusting or controlling f...
• Building A Combined Annotated Transcriptome To Use As A Reference Annotation In Rna-Seq Analysis
  Dear all, I am analyzing RNA-Seq data and I would like to compare my cufflinks transcripts to an...
• co-variance in DESeq2
  Hello all, I have got some RNAseq results back from a group of patients and a group of controls...
• Convert multiple FASTQ files into one BAM file
  Hello guys! I recently started working with NGS analysis and I may have a stupid question to ask....
• Blast
  Hi... I have an analysis of 18,000,000 + sequences (X4) blasting through the HTGS database. Is ...