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Question: co-variance in DESeq2
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gravatar for dc592
12 months ago by
dc592 • 0
dc592 • 0 wrote:

Hello all, I have got some RNAseq results back from a group of patients and a group of controls. I ran DESeq2 to see which genes where significantly differential expressed. When I looked at the PCA plots generated in the DESeq2 on galaxy it didn't group perfectly and I was wondering if it is possible to include Co-Variants like ages ect in the analysis? any ideas???

rna-seq • 301 views
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modified 12 months ago by Jennifer Hillman Jackson ♦ 25k • written 12 months ago by dc592 • 0
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gravatar for Jennifer Hillman Jackson
12 months ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

For covariant analysis in Deseq2, multiple top-level factors can be specified and populated with sub-factor levels and counts.

Tutorials:

Hope that helps! Jen, Galaxy team
ADD COMMENT • link written 12 months ago by Jennifer Hillman Jackson ♦ 25k
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